Functional Biology and Evolutionary Biology: A Different View of the Origin of Living Things

Hugo  Benitez

doi:10.54783/endlessjournal.v5i2.83

Authors

Hugo Benitez University of Manchester, UK

DOI:

https://doi.org/10.54783/endlessjournal.v5i2.83

Abstract

The distinction proposed by Ernst Mayr and François Jacob between functional biology and evolutionary biology is a fundamental key for a clear and conclusive treatment of two problems that, recurrently, are placed in the field of the Philosophy of Biology: that which concerns the possible character teleological of biological explanations and that relative to the autonomy of Biology in relation to Physics and Chemistry. Without supporting an alternative solution for any of these problems, we present that opposition showing its relevance for the treatment of such issues. Our idea is that they should not be raised without specifying which of the two domains of life sciences we are referring to.

References

Arnold, F. H. (2019). Innovation by Evolution: Bringing New Chemistry to Life (Nobel Lecture). Angewandte Chemie International Edition, 58(41), 14420-14426.

Castro, P. H., Bachmair, A., Bejarano, E. R., Coupland, G., Lois, L. M., Sadanandom, A., ... & Azevedo, H. (2018). Revised nomenclature and functional overview of the ULP gene family of plant deSUMOylating proteases. Journal of experimental botany, 69(19), 4505-4509.

Du Plessis, A., Broeckhoven, C., Yadroitsava, I., Yadroitsev, I., Hands, C. H., Kunju, R., & Bhate, D. (2019). Beautiful and functional: a review of biomimetic design in additive manufacturing. Additive Manufacturing, 27, 408-427.

Eder, M., Amini, S., & Fratzl, P. (2018). Biological composites—complex structures for functional diversity. Science, 362(6414), 543-547.

Ginsburg, S., & Jablonka, E. (2019). The evolution of the sensitive soul: learning and the origins of consciousness. MIT Press.

Grosicki, G. J., Fielding, R. A., & Lustgarten, M. S. (2018). Gut microbiota contribute to age-related changes in skeletal muscle size, composition, and function: biological basis for a gut-muscle axis. Calcified tissue international, 102(4), 433-442.

Hasson, U., Nastase, S. A., & Goldstein, A. (2020). Direct fit to nature: an evolutionary perspective on biological and artificial neural networks. Neuron, 105(3), 416-434.

Hill, M. S., Vande Zande, P., & Wittkopp, P. J. (2021). Molecular and evolutionary processes generating variation in gene expression. Nature Reviews Genetics, 22(4), 203-215.

Kristensen, L. S., Andersen, M. S., Stagsted, L. V., Ebbesen, K. K., Hansen, T. B., & Kjems, J. (2019). The biogenesis, biology and characterization of circular RNAs. Nature Reviews Genetics, 20(11), 675-691.

Kriventseva, E. V., Kuznetsov, D., Tegenfeldt, F., Manni, M., Dias, R., Simão, F. A., & Zdobnov, E. M. (2019). OrthoDB v10: sampling the diversity of animal, plant, fungal, protist, bacterial and viral genomes for evolutionary and functional annotations of orthologs. Nucleic acids research, 47(D1), D807-D811.

Louca, S., Polz, M. F., Mazel, F., Albright, M. B., Huber, J. A., O’Connor, M. I., ... & Parfrey, L. W. (2018). Function and functional redundancy in microbial systems. Nature ecology & evolution, 2(6), 936-943.

Marlétaz, F., Firbas, P. N., Maeso, I., Tena, J. J., Bogdanovic, O., Perry, M., ... & Irimia, M. (2018). Amphioxus functional genomics and the origins of vertebrate gene regulation. Nature, 564(7734), 64-70.

Osnas, J. L., Katabuchi, M., Kitajima, K., Wright, S. J., Reich, P. B., Van Bael, S. A., ... & Lichstein, J. W. (2018). Divergent drivers of leaf trait variation within species, among species, and among functional groups. Proceedings of the National Academy of Sciences, 115(21), 5480-5485.

Parisi, K., Shafee, T. M., Quimbar, P., van der Weerden, N. L., Bleackley, M. R., & Anderson, M. A. (2019, April). The evolution, function and mechanisms of action for plant defensins. In Seminars in cell & developmental biology (Vol. 88, pp. 107-118). Academic Press.

Reiter, J. G., Makohon-Moore, A. P., Gerold, J. M., Heyde, A., Attiyeh, M. A., Kohutek, Z. A., ... & Nowak, M. A. (2018). Minimal functional driver gene heterogeneity among untreated metastases. Science, 361(6406), 1033-1037.

Rives, A., Meier, J., Sercu, T., Goyal, S., Lin, Z., Liu, J., ... & Fergus, R. (2021). Biological structure and function emerge from scaling unsupervised learning to 250 million protein sequences. Proceedings of the National Academy of Sciences, 118(15), e2016239118.

Rosenberg, E., & Zilber-Rosenberg, I. (2018). The hologenome concept of evolution after 10 years. Microbiome, 6(1), 1-14.

Sackton, T. B., Grayson, P., Cloutier, A., Hu, Z., Liu, J. S., Wheeler, N. E., ... & Edwards, S. V. (2019). Convergent regulatory evolution and loss of flight in paleognathous birds. Science, 364(6435), 74-78.

Schrader, L., & Schmitz, J. (2019). The impact of transposable elements in adaptive evolution. Molecular Ecology, 28(6), 1537-1549.

Taylor, S. A., & Larson, E. L. (2019). Insights from genomes into the evolutionary importance and prevalence of hybridization in nature. Nature ecology & evolution, 3(2), 170-177.

Xia, X. (2018). DAMBE7: New and improved tools for data analysis in molecular biology and evolution. Molecular biology and evolution, 35(6), 1550-1552.